Variant report

Variant	rs5793234
Chromosome Location	chr11:86795356-86795357
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86666646..86669098-chr11:86793601..86796453,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246523	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv468776	chr11:86788716-86826422	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv555706	chr11:86788716-86826422	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv32300	chr11:86795356-86795356	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv2401931	chr11:86795356-86795357	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86770400-86808200	Weak transcription	HUVEC	blood vessel
2	chr11:86774800-86806400	Weak transcription	Small Intestine	intestine
3	chr11:86776600-86815600	Weak transcription	HSMMtube	muscle
4	chr11:86782600-86795400	Weak transcription	Fetal Heart	heart
5	chr11:86783000-86814000	Weak transcription	Hela-S3	cervix
6	chr11:86783200-86799000	Weak transcription	Psoas Muscle	Psoas
7	chr11:86787200-86795400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:86787400-86819600	Weak transcription	NH-A	brain
9	chr11:86787600-86804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:86787600-86825200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:86787800-86797200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:86787800-86797200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:86787800-86798200	Weak transcription	Spleen	Spleen
14	chr11:86787800-86804000	Weak transcription	Fetal Intestine Large	intestine
15	chr11:86787800-86817400	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:86787800-86819400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:86788000-86795400	Weak transcription	Lung	lung
18	chr11:86788000-86797200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:86788000-86797200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:86788000-86797200	Weak transcription	Esophagus	oesophagus
21	chr11:86788000-86797200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:86788000-86797200	Weak transcription	Fetal Thymus	thymus
23	chr11:86788000-86797200	Weak transcription	Thymus	Thymus
24	chr11:86788000-86798400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:86788000-86800000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:86788000-86800000	Weak transcription	Gastric	stomach
27	chr11:86788000-86803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:86788000-86803600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:86788000-86804200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:86788000-86804200	Weak transcription	Aorta	Aorta
31	chr11:86788000-86807000	Weak transcription	Pancreas	Pancrea
32	chr11:86788000-86808600	Weak transcription	Left Ventricle	heart
33	chr11:86788200-86795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:86788200-86796800	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:86788200-86797800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:86788200-86797800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:86788200-86808400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:86788200-86817800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:86788200-86824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:86788200-86830400	Weak transcription	Right Ventricle	heart
41	chr11:86788400-86803000	Weak transcription	NHDF-Ad	bronchial
42	chr11:86788400-86807800	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:86788600-86797200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:86788600-86802600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:86788600-86804200	Weak transcription	Placenta	Placenta
46	chr11:86788600-86806000	Weak transcription	A549	lung
47	chr11:86788600-86836400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:86789000-86797200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:86789000-86797600	Weak transcription	K562	blood
50	chr11:86789000-86802600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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