Variant report
Variant | rs57938128 |
---|---|
Chromosome Location | chr7:39972307-39972308 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:39971961..39975837-chr7:39987778..39990826,3 | MCF-7 | breast: | |
2 | chr7:39971819..39973979-chr7:39987698..39990592,2 | K562 | blood: | |
3 | chr7:39961241..39963014-chr7:39971580..39973102,2 | MCF-7 | breast: | |
4 | chr7:39972038..39974113-chr7:39987608..39989357,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000065883 | Chromatin interaction |
ENSG00000259826 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs17171650 | 1.00[EUR][1000 genomes] |
rs17496240 | 1.00[EUR][1000 genomes] |
rs17496254 | 1.00[EUR][1000 genomes] |
rs17537775 | 1.00[EUR][1000 genomes] |
rs17537887 | 1.00[EUR][1000 genomes] |
rs17537936 | 1.00[EUR][1000 genomes] |
rs17537957 | 1.00[EUR][1000 genomes] |
rs17538034 | 1.00[EUR][1000 genomes] |
rs17538139 | 1.00[EUR][1000 genomes] |
rs17538293 | 1.00[EUR][1000 genomes] |
rs57602515 | 1.00[EUR][1000 genomes] |
rs57832352 | 1.00[EUR][1000 genomes] |
rs60166394 | 1.00[EUR][1000 genomes] |
rs60489461 | 1.00[EUR][1000 genomes] |
rs6952564 | 1.00[EUR][1000 genomes] |
rs6962136 | 0.81[AFR][1000 genomes] |
rs6975868 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6977290 | 1.00[EUR][1000 genomes] |
rs7788679 | 0.88[AFR][1000 genomes] |
rs7797651 | 1.00[EUR][1000 genomes] |
rs7797841 | 1.00[EUR][1000 genomes] |
rs7809041 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv887973 | chr7:39772654-40110720 | Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 58 gene(s) | inside rSNPs | diseases |
2 | nsv887975 | chr7:39858378-40124137 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
3 | nsv887976 | chr7:39874986-40018693 | Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
4 | nsv887977 | chr7:39885541-40018693 | ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:39971600-39973600 | Weak transcription | Liver | Liver |