Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39977842..39980355-chr7:39980860..39982451,2	K562	blood:
2	chr7:39977387..39983895-chr7:39986475..39990977,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065883	Chromatin interaction
ENSG00000259826	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17171650	1.00[EUR][1000 genomes]
rs17496240	1.00[EUR][1000 genomes]
rs17496254	1.00[EUR][1000 genomes]
rs17537775	1.00[EUR][1000 genomes]
rs17537887	1.00[EUR][1000 genomes]
rs17537936	1.00[EUR][1000 genomes]
rs17537957	1.00[EUR][1000 genomes]
rs17538034	1.00[EUR][1000 genomes]
rs17538139	1.00[EUR][1000 genomes]
rs17538293	1.00[EUR][1000 genomes]
rs1973397	1.00[EUR][1000 genomes]
rs57602515	1.00[EUR][1000 genomes]
rs57832352	1.00[EUR][1000 genomes]
rs57938128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60166394	1.00[EUR][1000 genomes]
rs60489461	1.00[EUR][1000 genomes]
rs6952564	1.00[EUR][1000 genomes]
rs6962136	0.83[AFR][1000 genomes]
rs6977290	1.00[EUR][1000 genomes]
rs7788679	0.89[AFR][1000 genomes]
rs7797651	1.00[EUR][1000 genomes]
rs7797841	1.00[EUR][1000 genomes]
rs7809041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv887976	chr7:39874986-40018693	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv887977	chr7:39885541-40018693	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39977800-39980000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search: