Variant report

Variant	rs57943955
Chromosome Location	chr19:51965746-51965747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57906214	1.00[EUR][1000 genomes]
rs61701460	1.00[EUR][1000 genomes]
rs8100294	1.00[EUR][1000 genomes]
rs8109028	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv458724	chr19:51925519-51975723	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv579965	chr19:51925519-51975723	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv544051	chr19:51944903-52147459	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51963600-51966200	Enhancers	Placenta	Placenta
2	chr19:51963600-51967000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
3	chr19:51963800-51966400	Enhancers	Spleen	Spleen
4	chr19:51964000-51965800	Enhancers	Primary B cells from cord blood	blood
5	chr19:51964200-51967800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr19:51964400-51968000	Enhancers	Primary hematopoietic stem cells	blood
7	chr19:51964600-51965800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:51964600-51966800	Bivalent Enhancer	Adipose Nuclei	Adipose
9	chr19:51964600-51973000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:51965000-51967600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:51965200-51969000	Weak transcription	K562	blood
12	chr19:51965400-51966200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
13	chr19:51965400-51967000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr19:51965400-51967600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:51965400-51967600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr19:51965600-51965800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
17	chr19:51965600-51965800	Enhancers	Fetal Thymus	thymus
18	chr19:51965600-51966200	Bivalent Enhancer	Right Ventricle	heart
19	chr19:51965600-51966400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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