Variant report

Variant	rs8109028
Chromosome Location	chr19:51984966-51984967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51982494..51986261-chr19:52048308..52051566,4	K562	blood:
2	chr19:51976397..51978354-chr19:51984183..51986699,2	K562	blood:
3	chr19:51983757..51987538-chr19:51991208..51993510,4	K562	blood:
4	chr19:51983205..51985887-chr19:51992194..51995191,3	K562	blood:
5	chr19:51982291..51985014-chr19:51997405..51999546,2	K562	blood:
6	chr19:51969579..51971286-chr19:51983348..51985214,2	K562	blood:
7	chr19:51924289..51925900-chr19:51983340..51985014,2	K562	blood:
8	chr19:51984388..51985223-chr19:52110978..52111688,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10422932	1.00[JPT][hapmap]
rs3764548	1.00[JPT][hapmap]
rs4802831	1.00[JPT][hapmap]
rs57906214	1.00[EUR][1000 genomes]
rs57943955	1.00[EUR][1000 genomes]
rs61701460	1.00[EUR][1000 genomes]
rs73562163	1.00[AMR][1000 genomes]
rs8100294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv544051	chr19:51944903-52147459	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51984000-51985600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr19:51984400-51986000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:51984400-51988600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:51984600-51998800	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links