Variant report

Variant	rs579471
Chromosome Location	chr7:71687959-71687960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10251307	1.00[AFR][1000 genomes]
rs1232509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1232511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1232518	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2428279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2428281	0.82[AFR][1000 genomes]
rs2521199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2521200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2521202	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2521204	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677283	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677286	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2944836	0.84[AFR][1000 genomes]
rs4295535	0.84[AFR][1000 genomes]
rs4442008	1.00[AFR][1000 genomes]
rs4518555	1.00[AFR][1000 genomes]
rs4601191	0.95[AFR][1000 genomes]
rs472164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs472884	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs484279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs484343	1.00[AFR][1000 genomes]
rs490212	1.00[AFR][1000 genomes]
rs495774	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs498441	0.84[AFR][1000 genomes]
rs502780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502865	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs510451	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs511253	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs523703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs525723	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs531685	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs533150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs536128	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs548750	1.00[AFR][1000 genomes]
rs550322	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs563410	0.84[AFR][1000 genomes]
rs564528	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs567653	1.00[AFR][1000 genomes]
rs568003	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs569837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572043	1.00[AFR][1000 genomes]
rs573987	1.00[AFR][1000 genomes]
rs575357	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs581297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6460705	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6460706	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6460712	1.00[AFR][1000 genomes]
rs6946262	1.00[AFR][1000 genomes]
rs6948582	1.00[AFR][1000 genomes]
rs6949384	0.84[AFR][1000 genomes]
rs6969123	0.84[AFR][1000 genomes]
rs7791150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844714	0.84[AFR][1000 genomes]
rs859999	0.84[AFR][1000 genomes]
rs860009	0.84[AFR][1000 genomes]
rs864168	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1015848	chr7:71552185-71736068	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv538942	chr7:71552185-71736068	ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831024	chr7:71569349-71735250	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv529620	chr7:71604785-71935721	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv492243	chr7:71648955-71935721	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1017911	chr7:71665417-71714246	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv524800	chr7:71666864-71714102	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1019532	chr7:71676605-71714246	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1019700	chr7:71677836-71844973	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv538943	chr7:71677836-71844973	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71679000-71690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:71685600-71692800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:71686400-71692000	Strong transcription	Thymus	Thymus
4	chr7:71687200-71695400	Strong transcription	Fetal Thymus	thymus
5	chr7:71687600-71688000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:71687600-71688600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:71687800-71688600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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