Variant report

Variant	rs6460705
Chromosome Location	chr7:71649450-71649451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:71648521..71649566-chr7:71958858..71959802,3	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10251307	0.84[AFR][1000 genomes]
rs10950303	0.89[AFR][1000 genomes]
rs1232509	1.00[AMR][1000 genomes]
rs1232511	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1232518	1.00[AMR][1000 genomes]
rs1914379	1.00[YRI][hapmap]
rs2428279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2521199	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2521200	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2521202	1.00[AMR][1000 genomes]
rs2521204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677278	1.00[AMR][1000 genomes]
rs2677280	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2677286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2944836	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4295535	1.00[AFR][1000 genomes]
rs4442008	0.84[AFR][1000 genomes]
rs4518555	0.84[AFR][1000 genomes]
rs472164	1.00[AMR][1000 genomes]
rs472884	1.00[AMR][1000 genomes]
rs484279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs484343	0.84[AFR][1000 genomes]
rs490212	0.84[AFR][1000 genomes]
rs495774	1.00[AMR][1000 genomes]
rs498441	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs502780	1.00[AMR][1000 genomes]
rs502865	1.00[AMR][1000 genomes]
rs510451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs511253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs523703	1.00[AMR][1000 genomes]
rs525723	1.00[AMR][1000 genomes]
rs531685	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs533150	1.00[AMR][1000 genomes]
rs536128	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs548750	0.84[AFR][1000 genomes]
rs550322	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs563410	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs564528	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs567653	0.84[AFR][1000 genomes]
rs568003	1.00[AMR][1000 genomes]
rs569837	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572043	0.84[AFR][1000 genomes]
rs573987	0.84[AFR][1000 genomes]
rs575357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs579471	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs581297	1.00[AMR][1000 genomes]
rs6460706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6460712	0.84[AFR][1000 genomes]
rs6946262	0.84[AFR][1000 genomes]
rs6948582	0.84[AFR][1000 genomes]
rs6949384	1.00[AFR][1000 genomes]
rs6969123	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7791150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844681	0.81[AFR][1000 genomes]
rs844683	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs844697	1.00[YRI][hapmap]
rs844714	1.00[AFR][1000 genomes]
rs844718	0.88[AFR][1000 genomes]
rs844721	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs844726	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs844742	0.88[AFR][1000 genomes]
rs844748	0.88[AFR][1000 genomes]
rs844783	0.82[AFR][1000 genomes]
rs844787	1.00[YRI][hapmap]
rs844788	1.00[YRI][hapmap]
rs859999	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs860009	1.00[AFR][1000 genomes]
rs864168	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1015848	chr7:71552185-71736068	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv538942	chr7:71552185-71736068	ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831024	chr7:71569349-71735250	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv529620	chr7:71604785-71935721	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1026161	chr7:71623729-71654085	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv492243	chr7:71648955-71935721	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71641200-71686800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:71642400-71663000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:71643600-71658400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:71647800-71656000	Weak transcription	Thymus	Thymus
5	chr7:71649200-71652200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:71649400-71656600	Weak transcription	Fetal Thymus	thymus

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