Variant report

Variant	rs844748
Chromosome Location	chr7:71540585-71540586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2428279	0.88[AFR][1000 genomes]
rs2521204	0.88[AFR][1000 genomes]
rs2677283	0.88[AFR][1000 genomes]
rs2677286	0.88[AFR][1000 genomes]
rs4295535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs484279	0.88[AFR][1000 genomes]
rs510451	0.88[AFR][1000 genomes]
rs511253	0.88[AFR][1000 genomes]
rs536128	0.88[AFR][1000 genomes]
rs550322	0.88[AFR][1000 genomes]
rs569837	0.88[AFR][1000 genomes]
rs575357	0.88[AFR][1000 genomes]
rs6460705	0.88[AFR][1000 genomes]
rs6460706	0.88[AFR][1000 genomes]
rs7791150	0.88[AFR][1000 genomes]
rs844681	0.94[AFR][1000 genomes]
rs844683	0.94[AFR][1000 genomes]
rs844714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844717	1.00[AMR][1000 genomes]
rs844718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844754	0.89[AFR][1000 genomes]
rs844783	0.94[AFR][1000 genomes]
rs859999	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs860005	1.00[AMR][1000 genomes]
rs860009	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv831023	chr7:71443549-71588033	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv527501	chr7:71533900-71550079	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71539000-71540800	Strong transcription	Thymus	Thymus
2	chr7:71539400-71542800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:71539800-71541200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:71540000-71540600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:71540000-71540800	Genic enhancers	Fetal Thymus	thymus
6	chr7:71540200-71540800	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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