Variant report

Variant	rs844683
Chromosome Location	chr7:71495268-71495269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs2428279	0.81[AFR][1000 genomes]
rs2521204	0.81[AFR][1000 genomes]
rs2677283	0.81[AFR][1000 genomes]
rs2677286	0.81[AFR][1000 genomes]
rs4295535	0.81[AFR][1000 genomes]
rs484279	0.81[AFR][1000 genomes]
rs510451	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs511253	0.81[AFR][1000 genomes]
rs536128	1.00[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs550322	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs569837	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs575357	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs6460705	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6460706	0.81[AFR][1000 genomes]
rs7791150	0.81[AFR][1000 genomes]
rs844681	1.00[ASW][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs844697	1.00[YRI][hapmap]
rs844700	1.00[YRI][hapmap]
rs844703	1.00[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs844714	0.81[AFR][1000 genomes]
rs844717	0.82[YRI][hapmap]
rs844718	0.94[AFR][1000 genomes]
rs844721	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs844726	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs844728	0.82[YRI][hapmap]
rs844739	1.00[YRI][hapmap]
rs844742	0.94[AFR][1000 genomes]
rs844748	0.94[AFR][1000 genomes]
rs844754	0.83[AFR][1000 genomes]
rs844778	0.85[YRI][hapmap]
rs844782	1.00[ASW][hapmap]
rs844783	0.88[AFR][1000 genomes]
rs844787	1.00[YRI][hapmap]
rs844788	1.00[YRI][hapmap]
rs859999	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs860009	0.81[AFR][1000 genomes]
rs864168	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv831023	chr7:71443549-71588033	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71484600-71498400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:71490800-71498400	Weak transcription	Brain Anterior Caudate	brain
3	chr7:71490800-71498400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:71493400-71496600	Weak transcription	Pancreas	Pancrea
5	chr7:71493400-71503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:71493600-71497400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:71493600-71497600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:71493600-71498400	Weak transcription	Thymus	Thymus
9	chr7:71494400-71497800	Weak transcription	Fetal Brain Male	brain
10	chr7:71494600-71495800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:71494800-71495400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:71495000-71497600	Weak transcription	Fetal Thymus	thymus
13	chr7:71495200-71495400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr7:71495200-71497800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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