Variant report

Variant	rs57959784
Chromosome Location	chr15:40439345-40439346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57843539	1.00[EUR][1000 genomes]
rs7181563	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3423229	chr15:40417126-40447686	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3500491	chr15:40417175-40446353	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3500492	chr15:40417175-40446353	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40428600-40442200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40437400-40442200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:40438000-40439400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:40438000-40439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:40438400-40442200	Weak transcription	Hela-S3	cervix
6	chr15:40438400-40446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:40438600-40442000	Weak transcription	HSMMtube	muscle
8	chr15:40438600-40442200	Weak transcription	NH-A	brain
9	chr15:40438800-40442200	Weak transcription	A549	lung
10	chr15:40438800-40442200	Weak transcription	HSMM	muscle
11	chr15:40438800-40446800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:40439200-40441800	Weak transcription	HMEC	breast
13	chr15:40439200-40441800	Weak transcription	NHEK	skin
14	chr15:40439200-40442000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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