Variant report

Variant	rs7181563
Chromosome Location	chr15:40390948-40390949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40342956..40345791-chr15:40389827..40392011,2	MCF-7	breast:
2	chr15:40379925..40381610-chr15:40389500..40391529,2	MCF-7	breast:
3	chr15:40361459..40366979-chr15:40389781..40395512,5	MCF-7	breast:
4	chr15:40389103..40392679-chr15:40452401..40455332,4	K562	blood:
5	chr15:40389070..40391081-chr15:40419316..40421072,2	K562	blood:
6	chr15:40328740..40331785-chr15:40389787..40392261,3	K562	blood:
7	chr15:40357794..40362220-chr15:40389488..40392528,3	MCF-7	breast:
8	chr15:40372039..40375867-chr15:40386826..40392262,4	K562	blood:
9	chr15:40384830..40387803-chr15:40388131..40391380,3	K562	blood:
10	chr15:40345820..40349466-chr15:40390060..40393212,4	MCF-7	breast:
11	chr15:40388598..40390113-chr15:40390447..40392056,2	K562	blood:
12	chr15:40361484..40363622-chr15:40390334..40391984,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000248508	Chromatin interaction
ENSG00000259409	Chromatin interaction
ENSG00000156970	Chromatin interaction
ENSG00000140319	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57843539	1.00[EUR][1000 genomes]
rs57959784	1.00[EUR][1000 genomes]
rs7181491	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40383400-40394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:40384200-40392400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:40387200-40392800	Enhancers	Fetal Intestine Large	intestine
4	chr15:40387200-40395600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:40387200-40397800	Enhancers	Fetal Muscle Leg	muscle
6	chr15:40387400-40395200	Enhancers	NHLF	lung
7	chr15:40387600-40391400	Enhancers	Psoas Muscle	Psoas
8	chr15:40387600-40395200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:40387600-40397200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr15:40387800-40391000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:40388000-40391000	Flanking Active TSS	GM12878-XiMat	blood
12	chr15:40388000-40393800	Enhancers	Fetal Kidney	kidney
13	chr15:40388400-40392400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:40388600-40393000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr15:40388600-40393400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:40389000-40391000	Enhancers	Brain Anterior Caudate	brain
17	chr15:40389000-40394400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr15:40389200-40391600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:40389200-40391600	Enhancers	Right Ventricle	heart
20	chr15:40389200-40391800	Enhancers	Brain Substantia Nigra	brain
21	chr15:40389200-40392400	Enhancers	Lung	lung
22	chr15:40389200-40400000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:40389400-40391200	Enhancers	Primary hematopoietic stem cells	blood
24	chr15:40389400-40391400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:40389400-40391600	Enhancers	Spleen	Spleen
26	chr15:40389600-40391400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr15:40389600-40391400	Enhancers	Aorta	Aorta
28	chr15:40389600-40391400	Enhancers	Left Ventricle	heart
29	chr15:40389600-40391600	Enhancers	Pancreas	Pancrea
30	chr15:40389600-40391600	Enhancers	Right Atrium	heart
31	chr15:40389600-40391800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:40389600-40392400	Enhancers	Fetal Muscle Trunk	muscle
33	chr15:40389600-40393800	Enhancers	HUVEC	blood vessel
34	chr15:40389800-40391000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr15:40389800-40391400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr15:40389800-40391400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr15:40389800-40391600	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:40389800-40393600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr15:40389800-40394000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:40389800-40394200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:40389800-40400400	Enhancers	Small Intestine	intestine
42	chr15:40390000-40391000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:40390000-40391000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:40390000-40391000	Flanking Active TSS	HepG2	liver
45	chr15:40390000-40391200	Bivalent Enhancer	Placenta	Placenta
46	chr15:40390000-40391400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:40390000-40391400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:40390000-40391400	Flanking Active TSS	K562	blood
49	chr15:40390000-40391600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr15:40390000-40391600	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links