Variant report

Variant	rs57975893
Chromosome Location	chr5:104845057-104845058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11948491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11952493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11954769	1.00[AFR][1000 genomes]
rs55884454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56131643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56269769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56682978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57099222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61623942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860712	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6862169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776829	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776836	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7730718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882565	chr5:104355383-104923878	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv432794	chr5:104424968-105055467	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1018980	chr5:104458335-105018747	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv599268	chr5:104458953-105031008	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882595	chr5:104470386-104980355	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv882596	chr5:104470386-105095250	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv882597	chr5:104470386-105174036	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv534023	chr5:104473254-105029646	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1032051	chr5:104489459-104996814	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv882612	chr5:104552304-104864551	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1030414	chr5:104583231-105392990	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv537847	chr5:104583231-105392990	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv882617	chr5:104674096-104980355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv882618	chr5:104674096-104995466	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1032927	chr5:104707298-105323885	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv537848	chr5:104707298-105323885	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv882620	chr5:104709892-105007215	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv882623	chr5:104717739-104980355	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv882624	chr5:104717739-104993059	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv882625	chr5:104717739-105081035	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv882627	chr5:104721409-104874282	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv882628	chr5:104721409-104976565	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv471034	chr5:104734762-105007215	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv882631	chr5:104784402-104980355	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv882632	chr5:104789427-104880515	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv882633	chr5:104789427-104995466	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv882634	chr5:104789427-105017111	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:104837600-104845200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:104844400-104845800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:104844400-104846000	Enhancers	HUES64 Cell Line	embryonic stem cell

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