Variant report

Variant	rs57980837
Chromosome Location	chr6:14816864-14816865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14812932..14814943-chr6:14815644..14817410,3	K562	blood:
2	chr6:14814819..14819286-chr6:14819431..14823938,6	K562	blood:
3	chr6:14816647..14817275-chr6:15464243..15464812,2	K562	blood:
4	chr6:14814509..14817952-chr6:14819306..14824906,6	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11964947	1.00[AMR][1000 genomes]
rs11966335	1.00[AMR][1000 genomes]
rs11967306	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3425444	chr6:14816666-14816972	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14805400-14819000	Weak transcription	Right Atrium	heart
2	chr6:14806400-14818800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:14809000-14824400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:14810800-14819000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:14810800-14823200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:14812200-14824000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:14814200-14818000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:14814200-14822600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:14815400-14817000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:14815400-14817600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:14815400-14818800	Enhancers	Brain Germinal Matrix	brain
12	chr6:14815400-14820000	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:14815600-14817000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:14815600-14817400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:14815600-14817800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:14815600-14818200	Enhancers	Fetal Intestine Small	intestine
17	chr6:14815800-14817000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:14815800-14817000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:14815800-14817000	Enhancers	Brain Anterior Caudate	brain
20	chr6:14815800-14817200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:14815800-14817200	Enhancers	Fetal Intestine Large	intestine
22	chr6:14815800-14817600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:14815800-14818200	Enhancers	Ovary	ovary
24	chr6:14816000-14817200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:14816000-14817800	Enhancers	Brain Hippocampus Middle	brain
26	chr6:14816200-14817000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:14816200-14817000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:14816200-14817400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:14816400-14817000	Weak transcription	Adipose Nuclei	Adipose
30	chr6:14816400-14817000	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:14816400-14817000	Enhancers	Brain Substantia Nigra	brain
32	chr6:14816400-14817800	Enhancers	Small Intestine	intestine
33	chr6:14816400-14818600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:14816400-14820200	Enhancers	Stomach Mucosa	stomach
35	chr6:14816400-14824200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:14816600-14817000	Enhancers	Brain Angular Gyrus	brain
37	chr6:14816600-14817400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:14816600-14817400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:14816600-14817600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:14816600-14818000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:14816600-14819400	Enhancers	Fetal Heart	heart
42	chr6:14816800-14817000	Enhancers	Fetal Kidney	kidney
43	chr6:14816800-14817600	Enhancers	Pancreas	Pancrea
44	chr6:14816800-14820800	Weak transcription	Osteobl	bone
45	chr6:14816800-14821000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:14816800-14822200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:14816800-14824000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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