Variant report

Variant	rs57992649
Chromosome Location	chr6:144383647-144383648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
2	chr6:144380804..144383858-chr6:144383952..144386546,3	K562	blood:
3	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
4	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:
5	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:

Variant related genes	Relation type
ENSG00000235740	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17073326	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17073339	0.82[AMR][1000 genomes]
rs2092338	0.80[AMR][1000 genomes]
rs2223498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896695	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570600	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6929225	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6936891	0.97[EUR][1000 genomes]
rs73592669	0.95[AFR][1000 genomes]
rs73594687	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484840	0.97[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:144375800-144384600	Weak transcription	Gastric	stomach
3	chr6:144376800-144384200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:144377000-144384000	Weak transcription	Primary B cells from cord blood	blood
5	chr6:144377200-144383800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:144377200-144383800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:144377200-144383800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:144377400-144383800	Weak transcription	Thymus	Thymus
9	chr6:144377600-144384000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:144377600-144384200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144378200-144384000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:144382400-144383800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:144382600-144383800	Weak transcription	K562	blood
14	chr6:144382800-144383800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:144383600-144383800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:144383600-144383800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:144383600-144383800	Enhancers	GM12878-XiMat	blood
18	chr6:144383600-144384000	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:144383600-144384000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:144383600-144384400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:144383600-144384400	Enhancers	Brain Substantia Nigra	brain
22	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet

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