Variant report

Variant	rs6570600
Chromosome Location	chr6:144358526-144358527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1474882	0.81[AFR][1000 genomes]
rs17073326	0.80[ASN][1000 genomes]
rs2180243	0.93[AFR][1000 genomes]
rs2180244	0.93[AFR][1000 genomes]
rs2223498	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57992649	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6929225	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6936558	0.80[AFR][1000 genomes]
rs6936891	0.87[EUR][1000 genomes]
rs73592669	0.82[AFR][1000 genomes]
rs73594687	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403544	0.88[AFR][1000 genomes]
rs9484837	0.81[AFR][1000 genomes]
rs9484840	0.87[EUR][1000 genomes]
rs9496840	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144355600-144359800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:144358000-144358600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:144358000-144361800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:144358200-144358600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:144358200-144359200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:144358200-144359400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:144358400-144358800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:144358400-144359200	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:144358400-144359400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:144358400-144359400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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