Variant report

Variant	rs58006571
Chromosome Location	chr6:55400676-55400677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961070	1.00[AMR][1000 genomes]
rs3885995	0.81[AFR][1000 genomes]
rs55993267	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57555928	1.00[AMR][1000 genomes]
rs58660660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59077790	1.00[AMR][1000 genomes]
rs59493948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449066	1.00[AMR][1000 genomes]
rs73449078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451178	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451196	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744632	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744633	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73746355	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948358	chr6:55351282-55477277	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55384400-55410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:55394000-55407200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:55399200-55402400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:55400400-55418600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:55400600-55404000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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