Variant report

Variant	rs58006921
Chromosome Location	chr7:56035143-56035144
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:56034811..56036725-chr7:56042594..56044102,2	K562	blood:
2	chr7:56034331..56037104-chr7:56116413..56119304,2	K562	blood:
3	chr7:56035043..56037543-chr7:56067785..56069353,2	MCF-7	breast:
4	chr7:56018437..56023114-chr7:56029023..56035214,11	K562	blood:

Variant related genes	Relation type
ENSG00000146733	Chromatin interaction
ENSG00000239789	Chromatin interaction
ENSG00000146729	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1059309	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1078650	0.96[ASN][1000 genomes]
rs1136390	0.95[ASN][1000 genomes]
rs11974040	0.91[ASN][1000 genomes]
rs12154231	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154781	0.86[EUR][1000 genomes]
rs12155441	0.86[EUR][1000 genomes]
rs12532776	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668504	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668532	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669185	0.95[ASN][1000 genomes]
rs12669593	0.87[AFR][1000 genomes]
rs12674147	0.95[ASN][1000 genomes]
rs12674334	0.90[ASN][1000 genomes]
rs13231257	0.94[ASN][1000 genomes]
rs2006649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289062	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2331095	0.91[ASN][1000 genomes]
rs28438587	0.87[EUR][1000 genomes]
rs34795560	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34869068	0.91[ASN][1000 genomes]
rs35791463	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3778867	0.83[AMR][1000 genomes]
rs55852201	0.89[ASN][1000 genomes]
rs58981281	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59199266	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59849749	0.95[ASN][1000 genomes]
rs60160896	0.94[ASN][1000 genomes]
rs60962915	0.95[ASN][1000 genomes]
rs6593288	0.87[AFR][1000 genomes]
rs6593291	0.92[ASN][1000 genomes]
rs6947853	0.84[ASN][1000 genomes]
rs6955639	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6955773	0.87[AFR][1000 genomes]
rs6970842	0.82[EUR][1000 genomes]
rs6975697	0.91[ASN][1000 genomes]
rs73134780	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73138774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73138777	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7456530	0.94[ASN][1000 genomes]
rs7778601	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781165	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7793536	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7795095	0.84[ASN][1000 genomes]
rs7798243	0.91[ASN][1000 genomes]
rs7804578	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
9	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
11	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
12	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
13	nsv1034826	chr7:55962159-56092835	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv1033225	chr7:55962159-56094540	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56033000-56039200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:56033200-56035400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:56033200-56036200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:56033200-56036800	Weak transcription	Ovary	ovary
5	chr7:56033200-56045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:56033200-56045600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:56033200-56045600	Weak transcription	Aorta	Aorta
8	chr7:56033200-56045800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:56033200-56048600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:56033200-56050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:56033200-56081400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:56033400-56040400	Weak transcription	Small Intestine	intestine
13	chr7:56033400-56045200	Weak transcription	HUVEC	blood vessel
14	chr7:56033400-56045600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:56033400-56045600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:56033400-56047000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:56033400-56047600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:56033600-56036000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:56033600-56036800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:56033600-56037800	Weak transcription	Primary B cells from cord blood	blood
21	chr7:56033600-56045600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:56033800-56035200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:56033800-56035200	Genic enhancers	Dnd41	blood
24	chr7:56033800-56035400	Enhancers	Lung	lung
25	chr7:56033800-56036400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:56033800-56036400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:56033800-56036800	Weak transcription	Primary T cells from cord blood	blood
28	chr7:56033800-56037200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:56033800-56038200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:56033800-56038400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:56033800-56038400	Weak transcription	HSMMtube	muscle
32	chr7:56033800-56038600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:56033800-56038600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:56033800-56038600	Weak transcription	Stomach Mucosa	stomach
35	chr7:56033800-56039000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:56033800-56039400	Strong transcription	Fetal Intestine Small	intestine
37	chr7:56033800-56045400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:56033800-56045400	Weak transcription	Hela-S3	cervix
39	chr7:56033800-56045400	Weak transcription	HSMM	muscle
40	chr7:56033800-56045600	Weak transcription	Placenta	Placenta
41	chr7:56033800-56045800	Weak transcription	Fetal Thymus	thymus
42	chr7:56033800-56045800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:56033800-56046000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:56033800-56046800	Weak transcription	GM12878-XiMat	blood
45	chr7:56033800-56046800	Weak transcription	NHLF	lung
46	chr7:56033800-56047200	Weak transcription	Colonic Mucosa	Colon
47	chr7:56033800-56047800	Weak transcription	HMEC	breast
48	chr7:56033800-56063000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:56033800-56065800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:56034000-56035200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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