Variant report

Variant	rs58012467
Chromosome Location	chr4:98101372-98101373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17026520	1.00[EUR][1000 genomes]
rs17026561	1.00[EUR][1000 genomes]
rs55802373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55960153	1.00[EUR][1000 genomes]
rs56700848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56761791	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57847518	1.00[AMR][1000 genomes]
rs58009594	1.00[EUR][1000 genomes]
rs58199056	1.00[EUR][1000 genomes]
rs60046254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61410366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831293	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831945	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847410	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848251	1.00[EUR][1000 genomes]
rs73848252	1.00[EUR][1000 genomes]
rs73849122	1.00[EUR][1000 genomes]
rs7681538	1.00[EUR][1000 genomes]
rs7686751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98100400-98101400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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