Variant report

Variant	rs58013646
Chromosome Location	chr3:112379135-112379136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2399449	0.86[AMR][1000 genomes]
rs28374264	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4145150	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4145151	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55894063	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56302621	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57211180	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768072	0.84[AMR][1000 genomes]
rs6772102	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6793555	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7630314	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9845240	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112372400-112380600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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