Variant report

Variant	rs28374264
Chromosome Location	chr3:112387070-112387071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112385289..112387642-chr3:112388992..112390614,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11927615	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12054001	0.90[ASN][1000 genomes]
rs1249910	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1249929	0.87[EUR][1000 genomes]
rs13068244	0.84[EUR][1000 genomes]
rs13088866	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13092258	0.81[EUR][1000 genomes]
rs17457593	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2399449	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3843366	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4145150	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4145151	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55894063	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56302621	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57211180	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58013646	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60397548	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6768072	0.90[AMR][1000 genomes]
rs6772102	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6793555	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7630314	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820544	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs820545	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9818848	0.82[EUR][1000 genomes]
rs9821100	0.91[EUR][1000 genomes]
rs9833456	0.83[EUR][1000 genomes]
rs9842816	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9845240	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9864580	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864774	0.94[ASN][1000 genomes]
rs9864845	0.92[ASN][1000 genomes]
rs9876497	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112385800-112389800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:112386200-112389200	Weak transcription	Osteobl	bone
4	chr3:112386400-112387200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr3:112386600-112387200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:112386600-112388800	Weak transcription	K562	blood
7	chr3:112387000-112388800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:112387000-112389000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:112387000-112391200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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