Variant report

Variant	rs9864580
Chromosome Location	chr3:112383813-112383814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112358608..112360181-chr3:112382866..112385118,2	MCF-7	breast:
2	chr3:112382809..112385022-chr3:112393249..112395898,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11927615	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12054001	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12054416	0.84[EUR][1000 genomes]
rs1249910	0.90[ASN][1000 genomes]
rs13068244	0.90[EUR][1000 genomes]
rs13077054	0.85[EUR][1000 genomes]
rs13088866	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13092258	0.91[EUR][1000 genomes]
rs17457593	0.83[ASN][1000 genomes]
rs2399449	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28374264	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145150	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4145151	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55894063	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56302621	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60397548	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6768072	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6772102	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6793555	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630314	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820544	0.81[AMR][1000 genomes]
rs820545	0.83[AMR][1000 genomes]
rs9818848	0.92[EUR][1000 genomes]
rs9821100	0.84[EUR][1000 genomes]
rs9821161	0.84[EUR][1000 genomes]
rs9821338	0.84[EUR][1000 genomes]
rs9833456	0.93[EUR][1000 genomes]
rs9842816	0.83[ASN][1000 genomes]
rs9845240	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9859566	0.84[EUR][1000 genomes]
rs9864774	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9864845	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9876497	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112380800-112384000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:112383800-112384600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr3:112383800-112384600	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr3:112383800-112384800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr3:112383800-112384800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr3:112383800-112384800	Active TSS	K562	blood

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