Variant report

Variant	rs9821161
Chromosome Location	chr3:112375294-112375295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11927615	0.89[EUR][1000 genomes]
rs12054001	0.91[EUR][1000 genomes]
rs12054416	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1249910	0.81[EUR][1000 genomes]
rs13068244	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13077054	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13088866	0.89[EUR][1000 genomes]
rs13092258	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60397548	0.89[EUR][1000 genomes]
rs9818848	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9821100	1.00[ASN][1000 genomes]
rs9821338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833456	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9859566	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864580	0.84[EUR][1000 genomes]
rs9864774	0.93[EUR][1000 genomes]
rs9876497	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112372400-112380600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:112373400-112375400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:112373400-112376800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:112373800-112376400	Enhancers	NHDF-Ad	bronchial
5	chr3:112375000-112377400	Weak transcription	NHLF	lung
6	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:112375200-112376600	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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