Variant report

Variant	rs13092258
Chromosome Location	chr3:112403171-112403172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112400609..112402894-chr3:112402921..112405427,2	MCF-7	breast:
2	chr3:112395899..112398398-chr3:112400973..112403700,2	K562	blood:
3	chr3:112403072..112405454-chr3:112407369..112409970,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11927615	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12054001	0.83[EUR][1000 genomes]
rs12054416	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13068244	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13077054	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13088866	0.81[EUR][1000 genomes]
rs2399449	0.82[EUR][1000 genomes]
rs28374264	0.81[EUR][1000 genomes]
rs4145150	0.83[EUR][1000 genomes]
rs4145151	0.83[EUR][1000 genomes]
rs55894063	0.84[EUR][1000 genomes]
rs56302621	0.81[EUR][1000 genomes]
rs60397548	0.81[EUR][1000 genomes]
rs6768072	0.95[CEU][hapmap]
rs6772102	0.84[EUR][1000 genomes]
rs6793555	0.84[EUR][1000 genomes]
rs7630314	0.80[EUR][1000 genomes]
rs9683135	0.84[CEU][hapmap]
rs9818848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821100	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs9821161	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9821338	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9833456	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9845240	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9859566	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9864580	0.91[EUR][1000 genomes]
rs9876497	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112391400-112407800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:112396400-112404400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:112397000-112406000	Weak transcription	K562	blood
4	chr3:112397400-112405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:112400400-112404000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:112400400-112408200	Enhancers	NHLF	lung
7	chr3:112400600-112406600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:112400600-112408800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:112401000-112408800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:112401200-112403400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:112401200-112405200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:112401200-112406000	Enhancers	A549	lung
13	chr3:112401200-112413800	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:112401400-112403400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:112401400-112403600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:112401400-112408200	Enhancers	Osteobl	bone
17	chr3:112401600-112404000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:112401600-112404200	Weak transcription	HSMMtube	muscle
19	chr3:112401600-112407000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:112401800-112404200	Weak transcription	NH-A	brain
21	chr3:112401800-112407600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:112402000-112403400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:112402000-112403600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:112402400-112403400	Enhancers	HMEC	breast
25	chr3:112402600-112403200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:112402600-112407800	Enhancers	NHDF-Ad	bronchial
27	chr3:112402800-112403200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:112402800-112403400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:112402800-112403400	Enhancers	NHEK	skin
30	chr3:112402800-112404400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:112403000-112403600	Enhancers	HSMM	muscle
32	chr3:112403000-112407400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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