Variant report

Variant	rs13077054
Chromosome Location	chr3:112388443-112388444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11927615	0.92[EUR][1000 genomes]
rs12054001	0.93[EUR][1000 genomes]
rs12054416	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249910	0.83[EUR][1000 genomes]
rs13068244	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13088866	0.92[EUR][1000 genomes]
rs13092258	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60397548	0.91[EUR][1000 genomes]
rs9818848	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9821161	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9821338	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9833456	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9859566	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9864580	0.85[EUR][1000 genomes]
rs9864774	0.91[EUR][1000 genomes]
rs9876497	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112385800-112389800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:112386200-112389200	Weak transcription	Osteobl	bone
4	chr3:112386600-112388800	Weak transcription	K562	blood
5	chr3:112387000-112388800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:112387000-112389000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:112387000-112391200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:112387200-112388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:112387200-112389200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:112387600-112390400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:112388000-112395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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