Variant report

Variant	rs58015193
Chromosome Location	chr14:69075778-69075779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69075358..69077601-chr14:69259541..69262084,2	MCF-7	breast:
2	chr14:69071037..69077466-chr14:69256300..69263431,10	MCF-7	breast:
3	chr14:69070456..69072481-chr14:69073546..69076454,2	K562	blood:
4	chr14:69074322..69077383-chr14:69088480..69091108,3	MCF-7	breast:
5	chr14:69075162..69077749-chr14:69093538..69096283,3	MCF-7	breast:
6	chr14:69034895..69037596-chr14:69073887..69076844,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17106005	0.84[ASN][1000 genomes]
rs17106008	0.84[ASN][1000 genomes]
rs17106011	0.84[ASN][1000 genomes]
rs17106012	0.84[ASN][1000 genomes]
rs17834971	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902613	0.83[EUR][1000 genomes]
rs55990521	0.84[ASN][1000 genomes]
rs56104115	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72729553	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902069	chr14:69068384-69077457	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv516614	chr14:69069594-69077457	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
2	chr14:69069600-69080000	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69070400-69077400	Enhancers	Fetal Muscle Trunk	muscle
4	chr14:69072400-69079400	Enhancers	Fetal Intestine Large	intestine
5	chr14:69072400-69079800	Enhancers	Fetal Stomach	stomach
6	chr14:69072600-69078000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:69072600-69079400	Enhancers	Placenta	Placenta
8	chr14:69072800-69076200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr14:69072800-69076400	Enhancers	Adipose Nuclei	Adipose
10	chr14:69072800-69079200	Enhancers	Fetal Thymus	thymus
11	chr14:69072800-69079400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr14:69073000-69076200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:69073400-69075800	Enhancers	Fetal Lung	lung
14	chr14:69073400-69076000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:69073400-69076000	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:69073400-69076200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:69073400-69079800	Enhancers	Stomach Mucosa	stomach
18	chr14:69073600-69075800	Enhancers	Brain Hippocampus Middle	brain
19	chr14:69073600-69075800	Enhancers	HSMM	muscle
20	chr14:69073600-69076000	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:69073600-69076200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr14:69073600-69076200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:69073600-69076400	Enhancers	HSMMtube	muscle
24	chr14:69073800-69076000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:69073800-69076200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:69073800-69076200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr14:69073800-69076600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:69073800-69077200	Enhancers	Lung	lung
29	chr14:69073800-69077400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:69074000-69076400	Enhancers	Spleen	Spleen
31	chr14:69074400-69076200	Enhancers	Primary B cells from cord blood	blood
32	chr14:69074400-69078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:69074400-69078400	Weak transcription	NHDF-Ad	bronchial
34	chr14:69074400-69078800	Enhancers	Primary T cells from cord blood	blood
35	chr14:69074400-69078800	Weak transcription	Liver	Liver
36	chr14:69074600-69076000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:69074600-69076200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr14:69074600-69076600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr14:69074600-69076800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr14:69074600-69078400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:69074600-69078800	Weak transcription	Osteobl	bone
42	chr14:69074800-69076400	Enhancers	Fetal Intestine Small	intestine
43	chr14:69075000-69076400	Enhancers	Stomach Smooth Muscle	stomach
44	chr14:69075000-69077200	Weak transcription	Fetal Kidney	kidney
45	chr14:69075000-69077800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:69075000-69078400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:69075200-69076200	Weak transcription	Pancreas	Pancrea
48	chr14:69075200-69076400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:69075200-69077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr14:69075200-69081200	Weak transcription	Fetal Brain Male	brain

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