Variant report

Variant	rs58050918
Chromosome Location	chr15:60393917-60393918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17302937	1.00[EUR][1000 genomes]
rs1825364	1.00[EUR][1000 genomes]
rs59769588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59788641	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168530	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172584	0.82[AFR][1000 genomes]
rs7178247	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183320	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030189	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030714	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60388600-60395000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:60393400-60394000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:60393400-60394200	Enhancers	HepG2	liver
4	chr15:60393400-60394400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:60393600-60394200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:60393600-60394200	Enhancers	Placenta	Placenta
7	chr15:60393600-60394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:60393600-60394400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:60393800-60394200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr15:60393800-60394400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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