Variant report

Variant	rs59769588
Chromosome Location	chr15:60390612-60390613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58050918	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59788641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172584	0.94[AFR][1000 genomes]
rs7178247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030189	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030714	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60388600-60395000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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