Variant report

Variant	rs58051655
Chromosome Location	chr11:100650259-100650260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100644974..100648921-chr11:100650172..100653387,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11823529	0.81[ASN][1000 genomes]
rs12793858	0.84[ASN][1000 genomes]
rs17651772	0.81[ASN][1000 genomes]
rs2155140	0.87[ASN][1000 genomes]
rs35472062	0.80[ASN][1000 genomes]
rs3858412	0.81[ASN][1000 genomes]
rs536090	0.80[ASN][1000 genomes]
rs582409	0.80[ASN][1000 genomes]
rs595030	0.81[ASN][1000 genomes]
rs600906	0.80[ASN][1000 genomes]
rs607890	0.80[ASN][1000 genomes]
rs612090	0.81[ASN][1000 genomes]
rs614615	0.81[ASN][1000 genomes]
rs626558	0.81[ASN][1000 genomes]
rs660736	0.81[ASN][1000 genomes]
rs662449	0.80[ASN][1000 genomes]
rs685611	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100624600-100655600	Weak transcription	Left Ventricle	heart
2	chr11:100624600-100655600	Weak transcription	Right Ventricle	heart
3	chr11:100633200-100655600	Weak transcription	Psoas Muscle	Psoas
4	chr11:100640000-100655600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:100640200-100651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:100640400-100651000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:100640800-100655200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:100640800-100655200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:100640800-100655600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:100640800-100655600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:100643200-100658000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:100643200-100660000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:100643400-100655600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:100645400-100655800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:100645600-100655600	Weak transcription	Gastric	stomach
16	chr11:100645600-100679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:100645800-100655600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:100645800-100656000	Weak transcription	Colonic Mucosa	Colon
19	chr11:100645800-100679600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:100646000-100651000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:100646000-100651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:100646400-100651200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:100646400-100655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:100648800-100654200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:100649000-100651000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:100649000-100654400	Weak transcription	Fetal Heart	heart
27	chr11:100649000-100655600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:100649000-100655600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:100649000-100655600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:100649000-100655800	Weak transcription	HepG2	liver
31	chr11:100649200-100650600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:100649200-100654200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:100649200-100655000	Weak transcription	Fetal Intestine Large	intestine
34	chr11:100649400-100651000	Weak transcription	NHEK	skin
35	chr11:100649400-100651200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:100649600-100654200	Weak transcription	Fetal Lung	lung
37	chr11:100649600-100654200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:100649600-100655800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:100649800-100654200	Weak transcription	Fetal Intestine Small	intestine
40	chr11:100649800-100655600	Weak transcription	A549	lung
41	chr11:100649800-100661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:100650000-100654200	Weak transcription	Stomach Mucosa	stomach

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