Variant report

Variant	rs536090
Chromosome Location	chr11:100656083-100656084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100651768..100654603-chr11:100655934..100659680,3	K562	blood:
2	chr11:100651768..100655242-chr11:100655934..100659680,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10791427	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11224435	0.83[ASN][1000 genomes]
rs11224461	0.85[ASN][1000 genomes]
rs11224474	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11823529	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417529	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12419467	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12419937	0.91[ASN][1000 genomes]
rs12793858	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12801715	0.83[ASN][1000 genomes]
rs17651772	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867063	0.81[AMR][1000 genomes]
rs2155140	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35472062	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35473622	0.82[ASN][1000 genomes]
rs3858410	0.89[ASN][1000 genomes]
rs3858412	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754701	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs507695	0.84[YRI][hapmap]
rs509358	0.82[ASN][1000 genomes]
rs58051655	0.80[ASN][1000 genomes]
rs582409	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588615	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs595030	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs600906	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607890	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612090	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs614615	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs626558	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6590820	0.89[ASN][1000 genomes]
rs660736	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs662449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs685611	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100643200-100658000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:100643200-100660000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:100645600-100679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:100645800-100679600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100649800-100661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:100652000-100659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:100653200-100660000	Weak transcription	NHEK	skin
8	chr11:100653400-100660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:100654200-100656600	Enhancers	Fetal Lung	lung
10	chr11:100654200-100656800	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:100654200-100657000	Enhancers	Fetal Intestine Small	intestine
12	chr11:100654200-100657000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:100654200-100658400	Enhancers	Stomach Mucosa	stomach
14	chr11:100654400-100657000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:100654400-100658800	Enhancers	Fetal Heart	heart
16	chr11:100654400-100671200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:100655200-100656600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:100655200-100656600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr11:100655200-100656800	Enhancers	Small Intestine	intestine
20	chr11:100655400-100657600	Enhancers	Liver	Liver
21	chr11:100655600-100656400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr11:100655600-100656400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:100655600-100656400	Enhancers	Gastric	stomach
24	chr11:100655600-100656400	Enhancers	Left Ventricle	heart
25	chr11:100655600-100656400	Enhancers	Lung	lung
26	chr11:100655600-100656400	Enhancers	Psoas Muscle	Psoas
27	chr11:100655600-100656600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:100655600-100656600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:100655600-100656600	Enhancers	Ovary	ovary
30	chr11:100655600-100656600	Enhancers	Right Atrium	heart
31	chr11:100655600-100656600	Enhancers	Right Ventricle	heart
32	chr11:100655600-100656800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:100655600-100656800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:100655600-100656800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr11:100655600-100656800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:100655600-100656800	Enhancers	A549	lung
37	chr11:100655600-100657000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr11:100655800-100656400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:100655800-100656400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:100655800-100656400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:100655800-100656600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:100655800-100656600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:100655800-100656600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:100655800-100656600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:100655800-100656600	Enhancers	Pancreas	Pancrea
46	chr11:100655800-100656800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:100655800-100657000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr11:100655800-100657200	Enhancers	HepG2	liver
49	chr11:100656000-100656400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:100656000-100656400	Enhancers	Fetal Intestine Large	intestine

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