Variant report

Variant	rs58063601
Chromosome Location	chr20:41113467-41113468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:41083008..41085007-chr20:41112917..41114827,2	MCF-7	breast:
2	chr20:41106434..41108888-chr20:41112524..41115086,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs41279262	1.00[AMR][1000 genomes]
rs57598506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6102777	1.00[AMR][1000 genomes]
rs62204887	1.00[AMR][1000 genomes]
rs7266970	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271599	1.00[AMR][1000 genomes]
rs73273303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73273307	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73273308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73273317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1063422	chr20:41095537-41114340	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1807209	chr20:41107678-41154898	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41111800-41113600	Enhancers	Fetal Brain Male	brain
2	chr20:41112000-41116200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr20:41112200-41113600	Enhancers	Brain Substantia Nigra	brain
4	chr20:41112200-41113600	Enhancers	Right Atrium	heart
5	chr20:41112200-41113800	Enhancers	Fetal Muscle Trunk	muscle
6	chr20:41112200-41114000	Enhancers	Brain Hippocampus Middle	brain
7	chr20:41112400-41113600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr20:41112400-41114000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr20:41112400-41114400	Enhancers	Fetal Muscle Leg	muscle
10	chr20:41112400-41115200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr20:41112600-41113600	Weak transcription	Left Ventricle	heart
12	chr20:41112600-41113800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr20:41112800-41114600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr20:41113000-41114800	Enhancers	Fetal Kidney	kidney
15	chr20:41113200-41113800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr20:41113400-41113600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr20:41113400-41113600	Enhancers	Lung	lung
18	chr20:41113400-41113600	Enhancers	Pancreas	Pancrea
19	chr20:41113400-41113800	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr20:41113400-41114200	Weak transcription	Brain Germinal Matrix	brain
21	chr20:41113400-41114400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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