Variant report

Variant	rs6102777
Chromosome Location	chr20:40956240-40956241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs41279262	1.00[AMR][1000 genomes]
rs56378585	1.00[EUR][1000 genomes]
rs57598506	1.00[AMR][1000 genomes]
rs58063601	1.00[AMR][1000 genomes]
rs6030125	1.00[EUR][1000 genomes]
rs6093614	1.00[EUR][1000 genomes]
rs6093624	1.00[EUR][1000 genomes]
rs6102785	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6102787	1.00[EUR][1000 genomes]
rs6102790	1.00[EUR][1000 genomes]
rs6102792	1.00[EUR][1000 genomes]
rs62204887	1.00[AMR][1000 genomes]
rs7266970	1.00[AMR][1000 genomes]
rs73267617	1.00[EUR][1000 genomes]
rs73271599	1.00[AMR][1000 genomes]
rs73273303	1.00[AMR][1000 genomes]
rs73273307	1.00[AMR][1000 genomes]
rs73273308	1.00[AMR][1000 genomes]
rs73273311	1.00[AMR][1000 genomes]
rs73273317	1.00[AMR][1000 genomes]
rs985757	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv912874	chr20:40947084-40972949	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv523080	chr20:40949831-40964800	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv586004	chr20:40952914-40964972	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv516291	chr20:40952914-40970090	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv586005	chr20:40955893-40964972	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40945000-40957400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40956200-40957000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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