Variant report

Variant	rs58066803
Chromosome Location	chr9:72587668-72587669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72586580..72588000-chr9:72728026..72728995,9	MCF-7	breast:
2	chr9:72579585..72583057-chr9:72584421..72588172,5	K562	blood:

Variant related genes	Relation type
ENSG00000204706	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57487437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58989907	1.00[AMR][1000 genomes]
rs73446707	1.00[AMR][1000 genomes]
rs73446714	1.00[AMR][1000 genomes]
rs73446729	1.00[AMR][1000 genomes]
rs73446732	1.00[AMR][1000 genomes]
rs73446741	1.00[AMR][1000 genomes]
rs73450482	1.00[AMR][1000 genomes]
rs73450492	1.00[AMR][1000 genomes]
rs73452621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456341	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72580400-72590600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:72580600-72591000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:72584200-72591000	Weak transcription	Esophagus	oesophagus
4	chr9:72585200-72589800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:72585800-72590400	Weak transcription	HUVEC	blood vessel
6	chr9:72585800-72590800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:72586600-72588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:72586600-72588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:72587000-72589400	Weak transcription	HSMMtube	muscle
10	chr9:72587000-72590000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:72587000-72590600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:72587000-72590600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:72587000-72596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:72587200-72588200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72587200-72589200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:72587200-72589800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:72587200-72590000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:72587200-72590000	Weak transcription	NH-A	brain
19	chr9:72587200-72590400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:72587200-72590400	Weak transcription	NHLF	lung
21	chr9:72587200-72590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:72587200-72590600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:72587200-72590600	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:72587200-72590800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:72587200-72590800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:72587200-72590800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:72587400-72587800	Enhancers	Stomach Smooth Muscle	stomach
28	chr9:72587400-72589600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:72587400-72590600	Weak transcription	HMEC	breast
30	chr9:72587400-72590600	Weak transcription	NHDF-Ad	bronchial
31	chr9:72587400-72590600	Weak transcription	NHEK	skin
32	chr9:72587400-72590600	Weak transcription	Osteobl	bone
33	chr9:72587400-72590800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:72587400-72591000	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:72587600-72588000	Weak transcription	HSMM	muscle

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