Variant report

Variant	rs58081288
Chromosome Location	chr8:119861114-119861115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11573877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573902	1.00[AMR][1000 genomes]
rs16891571	1.00[AMR][1000 genomes]
rs60516609	1.00[AMR][1000 genomes]
rs73315539	1.00[AMR][1000 genomes]
rs73315548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317506	1.00[AMR][1000 genomes]
rs73317513	0.94[AFR][1000 genomes]
rs73319638	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321801	1.00[AMR][1000 genomes]
rs7818753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119856600-119861200	Weak transcription	HSMMtube	muscle
2	chr8:119856600-119862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:119856600-119862400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:119856800-119861800	Weak transcription	NHEK	skin
5	chr8:119856800-119862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:119856800-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:119857000-119861800	Weak transcription	HMEC	breast
8	chr8:119857000-119862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:119858200-119862000	Enhancers	Hela-S3	cervix
10	chr8:119859000-119862000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:119859000-119862200	Weak transcription	Osteobl	bone
12	chr8:119859000-119862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:119859000-119862800	Weak transcription	HSMM	muscle
14	chr8:119859000-119864200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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