Variant report

Variant	rs580973
Chromosome Location	chr6:69558221-69558222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69556808..69559307-chr6:69561378..69564071,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1120509	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12055424	0.99[ASN][1000 genomes]
rs12174093	0.92[ASN][1000 genomes]
rs1403926	0.92[ASN][1000 genomes]
rs1523936	0.92[ASN][1000 genomes]
rs1523938	0.84[ASN][1000 genomes]
rs2224011	0.94[ASN][1000 genomes]
rs2224014	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2342760	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28594921	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706061	0.92[ASN][1000 genomes]
rs4706710	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706712	0.92[ASN][1000 genomes]
rs472367	1.00[ASN][1000 genomes]
rs478789	0.92[ASN][1000 genomes]
rs480816	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs482005	0.91[ASN][1000 genomes]
rs482872	0.98[ASN][1000 genomes]
rs483875	0.91[ASN][1000 genomes]
rs483942	0.91[ASN][1000 genomes]
rs484684	0.98[ASN][1000 genomes]
rs484750	0.98[ASN][1000 genomes]
rs485721	0.95[ASN][1000 genomes]
rs486413	0.91[ASN][1000 genomes]
rs487408	0.91[ASN][1000 genomes]
rs487492	0.91[ASN][1000 genomes]
rs489218	0.90[ASN][1000 genomes]
rs491833	0.92[ASN][1000 genomes]
rs491928	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs492229	0.91[ASN][1000 genomes]
rs492823	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs492831	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs492954	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs493682	0.99[ASN][1000 genomes]
rs493768	0.91[ASN][1000 genomes]
rs496481	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs497240	0.90[ASN][1000 genomes]
rs497728	0.94[ASN][1000 genomes]
rs499251	0.91[ASN][1000 genomes]
rs500125	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs501140	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs501856	0.92[ASN][1000 genomes]
rs504160	0.92[ASN][1000 genomes]
rs505369	0.93[ASN][1000 genomes]
rs505948	0.89[ASN][1000 genomes]
rs506211	0.91[ASN][1000 genomes]
rs507326	0.99[ASN][1000 genomes]
rs508920	0.98[ASN][1000 genomes]
rs509304	0.92[ASN][1000 genomes]
rs509984	1.00[ASN][1000 genomes]
rs510779	0.91[ASN][1000 genomes]
rs512094	0.91[ASN][1000 genomes]
rs512476	0.98[ASN][1000 genomes]
rs513369	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs514518	0.87[ASN][1000 genomes]
rs514545	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs518704	0.86[ASN][1000 genomes]
rs522513	0.94[ASN][1000 genomes]
rs523962	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs525342	0.94[ASN][1000 genomes]
rs527932	0.94[ASN][1000 genomes]
rs528718	0.91[ASN][1000 genomes]
rs529105	0.98[ASN][1000 genomes]
rs530244	0.92[ASN][1000 genomes]
rs533890	0.98[ASN][1000 genomes]
rs536054	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs536322	0.91[ASN][1000 genomes]
rs538973	0.96[ASN][1000 genomes]
rs539111	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs540955	0.98[ASN][1000 genomes]
rs540974	0.91[ASN][1000 genomes]
rs541027	0.99[ASN][1000 genomes]
rs542600	0.98[ASN][1000 genomes]
rs542737	0.98[ASN][1000 genomes]
rs544398	0.98[ASN][1000 genomes]
rs547423	0.92[ASN][1000 genomes]
rs550348	0.92[ASN][1000 genomes]
rs550695	0.92[ASN][1000 genomes]
rs551216	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs551876	0.91[ASN][1000 genomes]
rs552283	0.99[ASN][1000 genomes]
rs553117	0.98[ASN][1000 genomes]
rs553613	0.94[ASN][1000 genomes]
rs555588	0.91[ASN][1000 genomes]
rs555959	0.91[ASN][1000 genomes]
rs558452	0.92[ASN][1000 genomes]
rs562537	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs563146	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs563817	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs564048	0.98[ASN][1000 genomes]
rs566537	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs568360	0.89[ASN][1000 genomes]
rs570276	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs570379	0.90[ASN][1000 genomes]
rs571299	0.90[ASN][1000 genomes]
rs573776	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs577328	0.90[ASN][1000 genomes]
rs577894	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs579304	0.91[ASN][1000 genomes]
rs579588	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs579773	0.89[ASN][1000 genomes]
rs580073	0.87[ASN][1000 genomes]
rs580182	0.90[ASN][1000 genomes]
rs6906092	0.90[ASN][1000 genomes]
rs6920573	0.94[ASN][1000 genomes]
rs6927848	0.92[ASN][1000 genomes]
rs6941602	0.94[ASN][1000 genomes]
rs9342736	0.94[ASN][1000 genomes]
rs9346252	0.94[ASN][1000 genomes]
rs9351741	0.93[ASN][1000 genomes]
rs9363974	0.85[ASN][1000 genomes]
rs9446070	0.83[ASN][1000 genomes]
rs9454636	0.92[ASN][1000 genomes]
rs9454639	0.91[ASN][1000 genomes]
rs951399	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9689807	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020792	chr6:69555181-69578740	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69556600-69562400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69557400-69566800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69558200-69558600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:69558200-69558800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:69558200-69559000	Enhancers	HUES48 Cell Line	embryonic stem cell

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