Variant report

Variant	rs2342760
Chromosome Location	chr6:69603223-69603224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69600061..69602030-chr6:69602130..69604236,2	K562	blood:
2	chr6:69602185..69604061-chr6:69605496..69607741,2	K562	blood:

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10485433	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs10806607	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs10945147	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1120509	1.00[ASN][1000 genomes]
rs12055424	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12174093	0.94[ASN][1000 genomes]
rs12191891	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13193787	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1403926	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1523936	0.94[ASN][1000 genomes]
rs1523938	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs1932611	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1932616	0.90[JPT][hapmap]
rs1932617	0.90[JPT][hapmap]
rs2224011	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs2224014	1.00[ASN][1000 genomes]
rs2342763	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs28594921	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798966	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs3823059	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs4706061	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4706710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706712	0.96[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs472367	0.98[ASN][1000 genomes]
rs478789	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs480816	1.00[ASN][1000 genomes]
rs482005	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs482872	1.00[ASN][1000 genomes]
rs483875	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs483942	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs484684	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs484750	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs485721	0.97[ASN][1000 genomes]
rs486413	0.90[ASN][1000 genomes]
rs487408	0.90[ASN][1000 genomes]
rs487492	0.90[ASN][1000 genomes]
rs489218	0.89[ASN][1000 genomes]
rs491833	0.94[ASN][1000 genomes]
rs491928	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs492229	0.90[ASN][1000 genomes]
rs492823	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs492831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492954	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs493682	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs493768	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs496481	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497240	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs497728	0.93[ASN][1000 genomes]
rs499251	0.90[ASN][1000 genomes]
rs500125	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs501140	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs501856	0.92[ASN][1000 genomes]
rs504160	0.94[ASN][1000 genomes]
rs505369	0.94[ASN][1000 genomes]
rs505948	0.89[ASN][1000 genomes]
rs506211	0.90[ASN][1000 genomes]
rs507326	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs508920	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs509304	0.94[ASN][1000 genomes]
rs509984	0.98[ASN][1000 genomes]
rs510779	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs512094	0.93[ASN][1000 genomes]
rs512476	1.00[ASN][1000 genomes]
rs513369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs514518	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs514545	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518704	0.86[ASN][1000 genomes]
rs522513	0.93[ASN][1000 genomes]
rs523962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525342	0.93[ASN][1000 genomes]
rs527932	0.93[ASN][1000 genomes]
rs528718	0.90[ASN][1000 genomes]
rs529105	1.00[ASN][1000 genomes]
rs530244	0.94[ASN][1000 genomes]
rs533890	1.00[ASN][1000 genomes]
rs534690	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs536054	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs536322	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs538973	0.99[ASN][1000 genomes]
rs539111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540955	1.00[ASN][1000 genomes]
rs540974	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs541027	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs542600	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs542737	1.00[ASN][1000 genomes]
rs544398	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs547423	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs550348	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs550695	0.94[ASN][1000 genomes]
rs551216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551876	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs552283	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs553117	1.00[ASN][1000 genomes]
rs553613	0.93[ASN][1000 genomes]
rs555588	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs555959	0.90[ASN][1000 genomes]
rs558452	0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs562537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563146	0.90[ASN][1000 genomes]
rs563817	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs564048	1.00[ASN][1000 genomes]
rs565292	1.00[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs566537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs568360	0.92[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs570276	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570379	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs571299	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs573776	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577328	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs577894	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579304	0.90[ASN][1000 genomes]
rs579588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579773	0.92[ASN][1000 genomes]
rs580073	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs580182	0.90[ASN][1000 genomes]
rs580973	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906092	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6912997	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs6920573	0.93[ASN][1000 genomes]
rs6927848	0.94[ASN][1000 genomes]
rs6937418	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6941602	0.93[ASN][1000 genomes]
rs7747549	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9342736	0.93[ASN][1000 genomes]
rs9346252	0.93[ASN][1000 genomes]
rs9346257	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs9351741	0.92[ASN][1000 genomes]
rs9363974	0.87[ASN][1000 genomes]
rs9446070	0.85[ASN][1000 genomes]
rs9454636	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9454639	0.93[ASN][1000 genomes]
rs951399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689807	0.92[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69601200-69609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69601600-69610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69601800-69603800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69602000-69604200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69602800-69621000	Weak transcription	Fetal Lung	lung

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