Variant report

Variant	rs7747549
Chromosome Location	chr6:69629187-69629188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69626389..69628676-chr6:69629021..69631728,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10485433	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10806607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10945147	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10945148	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12055424	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12174093	0.80[ASN][1000 genomes]
rs12191891	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs13193787	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs1403926	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.80[ASN][1000 genomes]
rs1523936	0.83[GIH][hapmap];0.89[TSI][hapmap];0.80[ASN][1000 genomes]
rs1523938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1932611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs1932616	0.87[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1932617	0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs2184724	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2184725	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2224011	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs2342760	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2342763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3798966	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs3798967	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3823059	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4706061	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.80[ASN][1000 genomes]
rs4706710	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs4706712	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs478789	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.80[ASN][1000 genomes]
rs482005	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs483875	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs483942	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs484684	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs484750	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs491833	0.80[ASN][1000 genomes]
rs491928	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs492823	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs492831	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs493682	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs493768	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs497240	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs500125	0.87[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs501140	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs504160	0.80[ASN][1000 genomes]
rs507326	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs508920	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs509304	0.80[ASN][1000 genomes]
rs510779	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs513369	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs514518	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs523962	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs530244	0.80[ASN][1000 genomes]
rs534690	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs536054	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs536322	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs539111	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs540974	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs541027	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs542600	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs544398	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs547423	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs550348	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs550695	0.80[ASN][1000 genomes]
rs551216	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs551876	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs552283	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs555588	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs558452	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs562537	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs565292	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs566537	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs568360	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs570379	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs571299	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap]
rs577328	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap]
rs579588	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs580073	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6906092	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6912997	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920061	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6927848	0.80[ASN][1000 genomes]
rs6937418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6939663	0.87[ASN][1000 genomes]
rs9346257	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9446070	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9454636	0.80[ASN][1000 genomes]
rs9454655	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs951399	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9689807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv525968	chr6:69618480-69638504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv519494	chr6:69619007-69638504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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