Variant report

Variant	rs1932616
Chromosome Location	chr6:69660841-69660842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10485433	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs10806607	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10945147	0.87[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10945148	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12055424	0.95[JPT][hapmap]
rs12191891	0.83[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs13193787	0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1403926	0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs1523938	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1932611	0.87[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap]
rs1932617	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2184724	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2184725	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2224011	0.82[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs2342760	0.90[JPT][hapmap]
rs2342763	0.86[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3798966	0.93[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs3798967	0.88[AMR][1000 genomes]
rs3823059	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs4706061	0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs4706710	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs4706712	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs478789	0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs482005	0.82[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs483875	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs483942	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs484684	0.95[JPT][hapmap]
rs484750	0.95[JPT][hapmap]
rs491928	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs492823	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs492831	0.95[JPT][hapmap]
rs493682	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs493768	0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs497240	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs500125	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs501140	0.90[JPT][hapmap]
rs507326	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs508920	0.95[JPT][hapmap]
rs510779	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs513369	0.95[JPT][hapmap]
rs514518	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs523962	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs534690	0.90[JPT][hapmap]
rs536054	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs536322	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs539111	0.95[JPT][hapmap]
rs540974	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs541027	0.95[JPT][hapmap]
rs542600	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs544398	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs547423	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs550348	0.94[JPT][hapmap]
rs551216	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs551876	0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs552283	0.95[JPT][hapmap]
rs555588	0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs558452	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs562537	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs565292	0.90[JPT][hapmap]
rs566537	0.95[JPT][hapmap]
rs568360	0.95[JPT][hapmap]
rs570379	0.95[JPT][hapmap]
rs571299	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs577328	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs579588	0.95[JPT][hapmap]
rs580073	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6906092	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6912997	0.81[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6920061	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6937418	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6939663	0.87[ASN][1000 genomes]
rs7747549	0.87[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap]
rs9346257	0.95[JPT][hapmap]
rs9454655	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs951399	0.94[JPT][hapmap]
rs9689807	0.87[CHB][hapmap];0.95[JPT][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
3	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
4	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
5	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:69652800-69672800	Weak transcription	Fetal Brain Male	brain
9	chr6:69654000-69661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:69655000-69664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:69659000-69661400	Enhancers	Fetal Intestine Small	intestine
14	chr6:69659200-69661400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:69659400-69661200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:69659600-69669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:69660600-69661600	Enhancers	Fetal Intestine Large	intestine

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