Variant report

Variant	rs2184725
Chromosome Location	chr6:69652633-69652634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10806607	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10945147	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10945148	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13193787	0.90[ASN][1000 genomes]
rs1523938	0.82[ASN][1000 genomes]
rs1932616	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1932617	0.88[AMR][1000 genomes]
rs2184724	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2342763	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798966	0.95[ASN][1000 genomes]
rs3798967	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6912997	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6920061	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6939663	0.95[ASN][1000 genomes]
rs9446070	0.83[ASN][1000 genomes]
rs9454655	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9689807	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv970302	chr6:69650881-69655471	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644000-69653600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:69644000-69653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69645200-69653600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
6	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
7	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
8	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69647600-69659200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69647600-69659200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
13	chr6:69652600-69658000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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