Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485433	0.82[JPT][hapmap]
rs10806607	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10945147	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10945148	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1523938	0.82[CHB][hapmap]
rs1932611	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1932616	0.88[AMR][1000 genomes]
rs1932617	0.84[AMR][1000 genomes]
rs2184724	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2184725	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2342763	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798966	0.81[JPT][hapmap]
rs497240	0.82[CHB][hapmap]
rs508920	0.85[JPT][hapmap]
rs510779	0.82[CHB][hapmap]
rs514518	0.82[CHB][hapmap]
rs552283	0.81[JPT][hapmap]
rs568360	0.83[CHB][hapmap]
rs570379	0.87[CHB][hapmap]
rs571299	0.82[CHB][hapmap]
rs577328	0.82[CHB][hapmap]
rs6912997	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6920061	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6937418	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7747549	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs9346257	0.85[CEU][hapmap]
rs9454655	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689807	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970302	chr6:69650881-69655471	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
3	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
4	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
5	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69647600-69659200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69647600-69659200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
9	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:69652600-69658000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:69652800-69672800	Weak transcription	Fetal Brain Male	brain
12	chr6:69654000-69661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:69655000-69664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain

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