Variant report

Variant	rs12191891
Chromosome Location	chr6:69631411-69631412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69626389..69628676-chr6:69629021..69631728,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10485433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10806607	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10945147	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[ASN][1000 genomes]
rs10945148	0.94[ASN][1000 genomes]
rs1120509	0.82[ASN][1000 genomes]
rs12055424	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13193787	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1403926	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1523938	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1932611	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1932616	0.83[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1932617	0.95[JPT][hapmap]
rs2184724	0.89[ASN][1000 genomes]
rs2184725	0.90[ASN][1000 genomes]
rs2224011	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs2224014	0.82[ASN][1000 genomes]
rs2342760	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2342763	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs28594921	0.82[ASN][1000 genomes]
rs3798966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3823059	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4706061	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs4706710	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs4706712	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs472367	0.80[ASN][1000 genomes]
rs478789	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs480816	0.82[ASN][1000 genomes]
rs482005	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs482872	0.82[ASN][1000 genomes]
rs483875	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs483942	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs484684	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs484750	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs491928	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs492823	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs492831	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs493682	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs493768	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs496481	0.82[ASN][1000 genomes]
rs497240	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs500125	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs501140	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs507326	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs508920	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs509984	0.80[ASN][1000 genomes]
rs510779	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs512476	0.82[ASN][1000 genomes]
rs513369	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs514518	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs514545	0.82[ASN][1000 genomes]
rs523962	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs529105	0.82[ASN][1000 genomes]
rs533890	0.82[ASN][1000 genomes]
rs534690	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs536054	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs536322	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs538973	0.81[ASN][1000 genomes]
rs539111	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs540955	0.82[ASN][1000 genomes]
rs540974	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs541027	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs542600	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs542737	0.82[ASN][1000 genomes]
rs544398	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs547423	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs550348	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs551216	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs551876	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs552283	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs553117	0.82[ASN][1000 genomes]
rs555588	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs558452	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs562537	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs563817	0.82[ASN][1000 genomes]
rs564048	0.82[ASN][1000 genomes]
rs565292	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs566537	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs568360	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs570276	0.82[ASN][1000 genomes]
rs570379	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs571299	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs573776	0.82[ASN][1000 genomes]
rs577328	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs577894	0.82[ASN][1000 genomes]
rs579588	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs580073	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs580973	0.80[ASN][1000 genomes]
rs6906092	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6912997	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6920061	0.89[ASN][1000 genomes]
rs6937418	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6939663	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7747549	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs9346257	1.00[JPT][hapmap]
rs9446070	0.86[ASN][1000 genomes]
rs9454655	0.89[ASN][1000 genomes]
rs951399	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9689807	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv525968	chr6:69618480-69638504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv519494	chr6:69619007-69638504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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