Variant report

Variant	rs534690
Chromosome Location	chr6:69565332-69565333
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1008234	0.81[CEU][hapmap]
rs10485433	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10806607	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10945147	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12055424	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12191891	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13193787	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13217051	0.81[CEU][hapmap]
rs1403926	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1523938	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1916767	0.80[CEU][hapmap]
rs1932611	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1932616	0.90[JPT][hapmap]
rs1932617	0.90[JPT][hapmap]
rs2224011	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2342760	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2342763	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3798966	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs3823059	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs4706061	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4706710	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4706712	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs478789	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs482005	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs483875	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs483942	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs484684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs484750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs491928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs492823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs492831	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs493682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs493768	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs497240	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs500125	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs501140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs507326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs508920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs510779	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs513369	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs514518	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs523962	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs536054	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs536322	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs539111	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs540974	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs541027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs542600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs544398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs547423	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs550348	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs551216	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs551876	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs552283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs555588	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs558452	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs562537	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs565292	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs566537	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs568360	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs570379	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs571299	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs577328	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs579588	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs580073	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6906092	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6912997	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs6937418	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7747549	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7760666	0.81[CEU][hapmap]
rs9294813	0.81[CEU][hapmap]
rs9346257	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs9454645	0.81[CEU][hapmap]
rs951399	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9689807	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs996768	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020792	chr6:69555181-69578740	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69557400-69566800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69562800-69566200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69564000-69567200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69564200-69569000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69564800-69567600	Weak transcription	Fetal Lung	lung

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