Variant report

Variant	rs3823059
Chromosome Location	chr6:69641998-69641999
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10485433	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10806607	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10945147	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10945148	0.89[ASN][1000 genomes]
rs12055424	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12191891	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs13193787	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1403926	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1523938	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1932611	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1932616	0.82[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs1932617	0.85[JPT][hapmap]
rs2184724	0.94[ASN][1000 genomes]
rs2184725	0.95[ASN][1000 genomes]
rs2224011	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2342760	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2342763	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs3798966	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706061	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4706710	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4706712	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs478789	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs482005	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs483875	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs483942	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs484684	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs484750	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs491928	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs492823	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs492831	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs493682	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs493768	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs497240	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs500125	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs501140	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs507326	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs508920	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs510779	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs513369	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs514518	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs523962	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs534690	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs536054	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs536322	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs539111	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs540974	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs541027	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs542600	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs544398	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs547423	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs550348	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs551216	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs551876	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs552283	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs555588	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs558452	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs562537	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs565292	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs566537	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs568360	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs570379	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs571299	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs577328	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs579588	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs580073	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6906092	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6912997	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6920061	0.94[ASN][1000 genomes]
rs6937418	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6939663	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747549	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9346257	0.90[JPT][hapmap]
rs9446070	0.81[ASN][1000 genomes]
rs9454655	0.94[ASN][1000 genomes]
rs951399	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9689807	0.95[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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