Variant report

Variant	rs58116380
Chromosome Location	chr6:45539095-45539096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45533105..45535281-chr6:45537536..45540429,2	MCF-7	breast:
2	chr6:45538385..45540491-chr6:45545062..45546957,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60938436	1.00[EUR][1000 genomes]
rs73448149	1.00[EUR][1000 genomes]
rs73450281	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73455393	1.00[EUR][1000 genomes]
rs7759853	1.00[EUR][1000 genomes]
rs9463101	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463104	1.00[EUR][1000 genomes]
rs9472510	1.00[EUR][1000 genomes]
rs961035	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv603009	chr6:45530471-45543530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv462940	chr6:45532214-45545975	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv603010	chr6:45532214-45545975	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45537000-45539200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:45537000-45540200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45537200-45540200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:45537200-45542000	Weak transcription	Fetal Thymus	thymus
5	chr6:45537400-45540600	Weak transcription	Esophagus	oesophagus
6	chr6:45537400-45544800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:45537400-45559000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:45537600-45542400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:45537600-45544400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:45537600-45544600	Weak transcription	Left Ventricle	heart
11	chr6:45537600-45544600	Weak transcription	Lung	lung
12	chr6:45537600-45545200	Weak transcription	NH-A	brain
13	chr6:45537600-45546000	Weak transcription	Right Atrium	heart
14	chr6:45537800-45544600	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:45538000-45542000	Weak transcription	Dnd41	blood
16	chr6:45538000-45542200	Weak transcription	HMEC	breast
17	chr6:45538000-45542600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:45538800-45544800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:45539000-45539400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:45539000-45541600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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