Variant report

Variant	rs58116488
Chromosome Location	chr7:128081138-128081139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2288551	0.95[EUR][1000 genomes]
rs2288552	1.00[EUR][1000 genomes]
rs2288555	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2288558	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3793166	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56777177	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57025636	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57342587	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58306387	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58346994	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58432768	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59521761	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959624	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60041365	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61030579	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72624929	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv1801356	chr7:128073366-128084133	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128073800-128083800	Weak transcription	Esophagus	oesophagus
3	chr7:128075600-128083600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:128075600-128093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:128075600-128093800	Weak transcription	Pancreas	Pancrea
6	chr7:128076000-128084000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:128076200-128081800	Weak transcription	HepG2	liver
8	chr7:128076400-128083400	Weak transcription	Placenta	Placenta
9	chr7:128076400-128083600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:128076400-128084000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:128078600-128095200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:128078800-128083800	Weak transcription	GM12878-XiMat	blood
13	chr7:128079400-128083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:128079400-128085800	Weak transcription	K562	blood
15	chr7:128079600-128083600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr7:128079600-128083800	Weak transcription	Adipose Nuclei	Adipose
17	chr7:128079600-128084200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:128080800-128081200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:128080800-128083600	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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