Variant report

Variant	rs60041365
Chromosome Location	chr7:128064438-128064439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128045147..128050080-chr7:128061541..128066850,10	MCF-7	breast:
2	chr7:128035982..128041518-chr7:128062564..128068284,7	MCF-7	breast:
3	chr7:128050107..128052046-chr7:128063361..128066207,2	MCF-7	breast:
4	chr7:128063888..128067571-chr7:128068051..128071487,5	MCF-7	breast:
5	chr7:128060108..128063097-chr7:128063704..128066560,3	K562	blood:
6	chr7:128044912..128048334-chr7:128062375..128066541,5	K562	blood:
7	chr7:128058762..128061562-chr7:128063088..128065048,2	K562	blood:
8	chr7:128042298..128048334-chr7:128059762..128065417,7	K562	blood:
9	chr7:128063091..128065550-chr7:128065722..128067520,2	K562	blood:
10	chr7:128055642..128057274-chr7:128062858..128065377,2	MCF-7	breast:
11	chr7:128048374..128053724-chr7:128060919..128066147,7	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2288551	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2288552	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2288555	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3793166	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4731452	0.86[ASN][1000 genomes]
rs56777177	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57025636	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57342587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58116488	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58306387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58346994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58432768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59521761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59959624	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61030579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs714510	0.83[ASN][1000 genomes]
rs72624929	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128060400-128065000	Enhancers	Fetal Muscle Leg	muscle
3	chr7:128060600-128064800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:128061000-128065200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:128062600-128064800	Enhancers	HepG2	liver
6	chr7:128063000-128071600	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:128063200-128065600	Weak transcription	Placenta	Placenta
8	chr7:128063600-128065400	Enhancers	Fetal Lung	lung
9	chr7:128063800-128064600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:128063800-128064800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:128063800-128065000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr7:128063800-128065400	Enhancers	Stomach Smooth Muscle	stomach
13	chr7:128064000-128064600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:128064000-128065400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr7:128064000-128067400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:128064000-128067600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:128064200-128067600	Weak transcription	A549	lung
18	chr7:128064200-128070800	Weak transcription	Adipose Nuclei	Adipose
19	chr7:128064400-128064800	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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