Variant report

Variant	rs58117173
Chromosome Location	chr13:110462391-110462392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110455656..110459242-chr13:110460543..110463426,3	MCF-7	breast:
2	chr13:110461237..110464119-chr13:110472435..110474206,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11069805	1.00[ASN][1000 genomes]
rs11069806	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11618950	0.89[ASN][1000 genomes]
rs12427994	1.00[ASN][1000 genomes]
rs12429603	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57988999	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59041354	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492227	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333550	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123779	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123780	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123783	0.86[EUR][1000 genomes]
rs74123785	0.86[EUR][1000 genomes]
rs745324	0.98[AFR][1000 genomes]
rs7987339	1.00[ASN][1000 genomes]
rs7987651	1.00[ASN][1000 genomes]
rs7996932	1.00[ASN][1000 genomes]
rs9301412	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9521516	1.00[ASN][1000 genomes]
rs9521522	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583427	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv826790	chr13:110395165-110463032	Weak transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv826791	chr13:110397733-110462553	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110455800-110469200	Weak transcription	Pancreas	Pancrea
2	chr13:110461600-110462400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:110461800-110462400	Enhancers	Gastric	stomach
4	chr13:110461800-110462600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:110462000-110462400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:110462000-110462600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr13:110462200-110464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:110462200-110464200	Enhancers	HSMM	muscle

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