Variant report

Variant	rs745324
Chromosome Location	chr13:110465297-110465298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11619362	0.83[AMR][1000 genomes]
rs58117173	0.98[AFR][1000 genomes]
rs7333550	0.94[AFR][1000 genomes]
rs74123780	0.86[AFR][1000 genomes]
rs7984342	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9521522	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs745324	CARKD	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110455800-110469200	Weak transcription	Pancreas	Pancrea
2	chr13:110463400-110468800	Weak transcription	NH-A	brain
3	chr13:110463600-110468600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:110463600-110468800	Weak transcription	HSMMtube	muscle
5	chr13:110463800-110469200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:110464200-110468400	Weak transcription	HSMM	muscle
7	chr13:110464400-110468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:110464800-110465600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:110464800-110465600	Enhancers	Fetal Muscle Trunk	muscle
10	chr13:110465000-110465600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr13:110465200-110466400	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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