Variant report

Variant	rs58118126
Chromosome Location	chr12:67745893-67745894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17103908	1.00[AMR][1000 genomes]
rs56056703	1.00[AMR][1000 genomes]
rs56286665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59436268	1.00[AMR][1000 genomes]
rs59969216	1.00[AMR][1000 genomes]
rs7134804	1.00[AMR][1000 genomes]
rs74100303	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74100350	1.00[AMR][1000 genomes]
rs74100354	1.00[AMR][1000 genomes]
rs74100361	1.00[AMR][1000 genomes]
rs74100364	1.00[AMR][1000 genomes]
rs74100366	1.00[AMR][1000 genomes]
rs74100376	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67716600-67748000	Weak transcription	HSMM	muscle
2	chr12:67728400-67748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:67733600-67748200	Weak transcription	Psoas Muscle	Psoas
4	chr12:67733800-67748000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr12:67733800-67761800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:67741800-67759200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:67744000-67747800	Weak transcription	Osteobl	bone
8	chr12:67745200-67748200	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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