Variant report
| Variant | rs74100303 |
|---|---|
| Chromosome Location | chr12:67658471-67658472 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GRIP1-8 | chr12:67656109-67663060 | NONHSAT029243 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1405466 | 1.00[AMR][1000 genomes] |
| rs56056703 | 1.00[AMR][1000 genomes] |
| rs56286665 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58118126 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59436268 | 1.00[AMR][1000 genomes] |
| rs59969216 | 1.00[AMR][1000 genomes] |
| rs7134804 | 1.00[AMR][1000 genomes] |
| rs7136700 | 1.00[AMR][1000 genomes] |
| rs74100350 | 1.00[AMR][1000 genomes] |
| rs74100354 | 1.00[AMR][1000 genomes] |
| rs74100361 | 1.00[AMR][1000 genomes] |
| rs74100364 | 1.00[AMR][1000 genomes] |
| rs74100366 | 1.00[AMR][1000 genomes] |
| rs74100376 | 1.00[AMR][1000 genomes] |
| rs7963403 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054111 | chr12:67556780-67865542 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:67658400-67658800 | ZNF genes & repeats | Liver | Liver |
