Variant report

Variant	rs58133055
Chromosome Location	chr15:60813735-60813736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60812272..60814233-chr15:60816818..60818957,2	MCF-7	breast:
2	chr15:60769472..60772298-chr15:60812491..60814622,2	MCF-7	breast:
3	chr15:60685661..60687201-chr15:60812943..60814680,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245534	Chromatin interaction
ENSG00000128915	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57419470	1.00[AMR][1000 genomes]
rs58443081	1.00[AMR][1000 genomes]
rs60716962	1.00[AMR][1000 genomes]
rs6494190	1.00[AMR][1000 genomes]
rs73420072	1.00[AMR][1000 genomes]
rs73420074	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525689	chr15:60740841-60823417	Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60772800-60846800	Weak transcription	Primary B cells from cord blood	blood
2	chr15:60779800-60814800	Weak transcription	Ovary	ovary
3	chr15:60794800-60830400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:60796800-60818400	Weak transcription	Spleen	Spleen
5	chr15:60800400-60825000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:60800600-60823800	Weak transcription	HSMMtube	muscle
7	chr15:60802800-60818200	Weak transcription	Fetal Heart	heart
8	chr15:60804200-60819600	Weak transcription	Right Atrium	heart
9	chr15:60804200-60820000	Weak transcription	Right Ventricle	heart
10	chr15:60804200-60828200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:60804200-60850200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:60804400-60817000	Weak transcription	Fetal Lung	lung
13	chr15:60804400-60817800	Weak transcription	Fetal Kidney	kidney
14	chr15:60804800-60819400	Weak transcription	Thymus	Thymus
15	chr15:60804800-60825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:60804800-60837400	Weak transcription	Fetal Intestine Small	intestine
17	chr15:60805000-60824800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:60806000-60817400	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:60806000-60818400	Weak transcription	Pancreas	Pancrea
20	chr15:60806200-60826400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:60806400-60825800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:60806400-60826200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:60806600-60817400	Weak transcription	Adipose Nuclei	Adipose
24	chr15:60806600-60817600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:60806800-60834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:60806800-60834600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:60806800-60849600	Weak transcription	Aorta	Aorta
28	chr15:60807000-60817400	Weak transcription	Fetal Stomach	stomach
29	chr15:60807000-60822200	Weak transcription	Lung	lung
30	chr15:60807000-60826000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:60807000-60834200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:60807600-60817400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:60807600-60826200	Weak transcription	Brain Anterior Caudate	brain
34	chr15:60810600-60816400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:60811000-60818200	Weak transcription	Left Ventricle	heart
36	chr15:60811200-60814600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:60811200-60815600	Weak transcription	Esophagus	oesophagus
38	chr15:60811400-60820200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
39	chr15:60811600-60814200	Weak transcription	Colon Smooth Muscle	Colon
40	chr15:60812200-60814000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:60812200-60816200	Weak transcription	HepG2	liver
42	chr15:60812200-60817000	Weak transcription	Liver	Liver
43	chr15:60812400-60834600	Weak transcription	Gastric	stomach
44	chr15:60812800-60815400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:60812800-60816400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:60812800-60817400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:60813000-60814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:60813000-60814400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:60813000-60814400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:60813000-60814600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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